PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38389
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 290aa    MW: 32342.8 Da    PI: 8.8512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38389genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013100122123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C k Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA38389 100 FSCSFCRKQFSTSQALGGHQNAH 122
                                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-796127No hitNo description
Gene3DG3DSA:3.30.160.604.8E-596126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASTSEQSST TSEGISQKSC EEENNINNKG KEVVQCQQHQ PSNSIKLSKD DSIRGSKVQE  60
RDFVTHTKNL EVGSSSLGWA NNKTNKEKNT GNKSSDSKNF SCSFCRKQFS TSQALGGHQN  120
AHKRERALAK HRQEMHNGFG IPRHPFPYYT NYPSLSSSYY GFGSFNKALG IRMESMIHKP  180
SYSLTPPPYK FGSTPTWAPM QEMRNFSSMQ EMRNFSSLGE LKIEGLNTSN GSSATPTWRN  240
NVIKLDNIGE SSINVIKSNM VVTDNDQHGM RKEEDSDSES TELDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487223.16e-86PREDICTED: zinc finger protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-17C2H2 family protein